Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs62521799 chr8:124134987 G/A 5.83E-6 116 39.75 50.13 25.83 KM Plot
THYM rs6413866 chr1:227341694 C/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs6426570 chr1:227341544 C/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs6426581 chr1:227368905 A/G 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs6426583 chr1:227374493 A/G 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs6446479 chr4:6291737 G/C 1.25E-6 118 25.83 38.58 50.13 KM Plot
THYM rs6448926 chr4:12562473 C/A 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs6472283 chr8:50107233 A/T 3.82E-10 118 46.43 49.4 25.83 KM Plot
THYM rs6472284 chr8:50107235 A/G 3.82E-10 118 46.43 49.4 25.83 KM Plot
THYM rs6472315 chr8:50185255 C/T 2.69E-10 118 46.07 51.53 25.83 KM Plot
THYM rs6479536 chr9:97109940 C/T 9.75E-5 116 41.22 44.3 17.03 KM Plot
THYM rs6479541 chr9:97203788 A/G 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs6479545 chr9:97217275 G/A 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs6497751 chr16:24702978 G/A 5.63E-7 119 28.43 30.03 49.4 KM Plot
THYM rs6497759 chr16:24801737 G/A 3.37E-6 119 48 30.03 31.37 KM Plot